Patrice Koehl
Department of Computer Science
Genome Center
Room 4319, Genome Center, GBSF
451 East Health Sciences Drive
University of California
Davis, CA 95616
Phone: (530) 754 5121
koehl@cs.ucdavis.edu




Modeling and Data Analysis in Life Sciences: 2017

Projects


General notes regarding the projects:
  • There are three options for the project: please pick one. You may do more than one if you want, but I will only take one into account and you will not get extra credit for doing more
  • You may decide to use some additional resources to solve your project: this is perfectly fine. It is very important however that web pages, servers, research papers, textbooks, etc. used for the projects are cited properly in a reference section in the report.
  • The project is due on Sept 30th at the latest. No exception
# Link Task Documents Additional informations
1 Project 1 Simulation:
Simulation: Logistic Map
Word document (click to download)
or
PDF handout (click to download)
2 Project 2 Measuring the size of an object:
Volume of a protein
Word document (click to download)
or
PDF handout (click to download)
Input file: protein.crd
In this file:
  • The first line sets the number N of atoms in the file (N=2775)
  • the following N lines describe the atoms; each line gives the X, Y, Z positions of the center of the atom, and the radius R of the atom, in that order.
3 Project 3 Image processing
Drawing an elephant
Word document (click to download)
or
PDF handout (click to download)
Input file: elephant.jpg









  Page last modified 30 August 2017 http://www.cs.ucdavis.edu/~koehl/