Patrice Koehl
Department of Computer Science
Genome Center
Room 4319, Genome Center, GBSF
451 East Health Sciences Drive
University of California
Davis, CA 95616
Phone: (530) 754 5121

Computational Structural Bioinformatics: Winter 2020

General information

Lecture Time and Location:

Mon-Wed-Fri 9:00 am-9:50 am; 146 Olson Hall

Discussion sessions:

Wed 11:00 am -11:50 am; 146 Olson


Prof. Patrice Koehl
koehl at
This is the only email address that will be answered.
Your subject line MUST include “ECS129″.

Course homepage:

Office Hours:

Thu 2:00 - 3:50pm, 3059 Kemper
Fri 10:00 am - 12:00 pm, 3059 Kemper


Midterm 1: Mon, Feb 3
Midterm 2: Mon, Mar 2



Information sheet:

Word document or PDF file



Tangible success of the many genome sequencing projects currently underway (from human to dog, mouse, rat, tomatoes,...) will come from the unraveling of the information contained in the corresponding sequences, and from constructing models that relate the genotype (i.e. the information coded in the genes) to the phenotype (the physical manifestation) of an organism. Our goal in this course is to provide an overview of the challenges faced by bioinformatics, a new branch of both computer science and biology whose aims are to collect, organize and analyze the data coming from these genomics projects. We will focus in particular on the importance of structural data.

The Tree of Life

Academic Conduct

The rules for conduct in UC Davis classes can be summarized with three principles:

  • Be polite.
  • Don’t cheat.
  • Don’t lie.

Be polite

As adults meeting in a professional context, we should all behave professionally: this means being polite and respectful to everyone we deal with.

As the instructor, it is my responsibility to teach as well as I can and to be available, polite and respectful to you.

You are responsible for treating me and your fellow students politely and with respect.

Don’t cheat

As the instructor, it is my responsiblity to make tests and assignments that are fair, to grade fairly, to look for cheating, and to refer students who cheat to Student Judicial Affairs for possible sanctions. The English department made the largest number of referrals to SJA last year, but Computer Science was in the top 10.

As students, it is your responsibility to avoid cheating and to discourage other students from cheating.

Don’t lie

Cheating is one form of lies, but there are other. Manipulating data, false claim of ownership of an assignment/idea, plagiarism are all forms of lies. Do not lie to the instructor, and even more importantly, do not lie to yourself!


  Page last modified 17 February 2020